![]() ![]() If ImageJ is not already installed, click here to download the appropriate version. InstallĬANDLE-J is an ImageJ (64-bit) plugin and requires ImageJ to be installed on the computer. The -O3 option makes the compiler strive to improve the performance of the object code. ![]() Additionally, the two C programs were compiled with the GCC optimizing option -O3 turned on. The Optimized Non Local Means Filter (ONLM) is the bottleneck of the CANDLE-J software and hence the ONLM algorithm is written as a multithreaded C program to improve performance. The C methods are accessed with the aide of the Java Native Access library. The denoising algorithms are written in Jython, Java and C. The Collaborative Approach for eNhanced Denoising under Low-light Excitation (CANDLE) has been tested on synthetic data, images acquired on microspheres and in vivo images. CANDLE-J is very adept at processing deep in vivo multiphoton microscopy images where the signal to noise ratio (SNR) is low. Free for all use.CANDLE-J is a 3D image denoising software designed as an ImageJ (64-bit) plugin and an open source alternative to the CANDLE MATLAB program. The complexity of the algorithm is O(N), where N is the number of pixels in the image. X-coordinates increase towards the right and y-coordinates increase downwards. That means (x=0,y=0) is at the topmost left corner of the screen. The coordinate system of the image is used. The vectors are normalized before printed. Jama, the Java matrix package, public domain, is used for extracting the eigenvalues and eigenvectors from the covariance matrix. The covariance matrix of the x,y,z coordinates of each label.įor the mathematical details, see this paper, pages 31-32 (23-24). ![]() class filesĬalculates the orientation of all labels (intensity values) in the imageīy finding the eigenvector associated with the largest eigenvalue of
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